Position dependent AACCC

From Table IIa: Position-dependent, orientation-independent pentamers
AACCC and/or GGGTT
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

early_g1: -598 to -500 nt upstream of the ATG start codon: 13 genes

YBL023C	MCM2	Minichromosome maintenance protein, transcription factor

YBR054W	YRO2	Homolog to HSP30 heat shock protein YRO1 (S. cerevisiae) 7

```
YBR067C	TIP1	cell wall mannoprotein
```
```
YBR200W	BEM1	contains two SH3 domains
```
```
YDL117W		
```
```
YDL179W	PCL9	Cyclin
```

YDR368W	YPR1	similar to aldo-keto reductase

YGL055W	OLE1	delta-9-fatty acid desaturase

```
YJL157C	FAR1	Cdc28p kinase inhibitor
```
```
YMR254C		
```
```
YNR067C		
```
```
YPL004C		
```

YPL058C	PDR12	multidrug resistance transporter

early_g1: -499 to -401 nt upstream of the ATG start codon: 6 genes

YBL023C	MCM2	Minichromosome maintenance protein, transcription factor

YBR054W	YRO2	Homolog to HSP30 heat shock protein YRO1 (S. cerevisiae) 7

```
YCL040W	GLK1	Glucokinase
```
```
YLR254C		
```

YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

YPR019W	CDC54	Involved in initiation of DNA replication

early_g1: -400 to -302 nt upstream of the ATG start codon: 4 genes

```
YBR158W		
```
```
YGR035C		
```

YMR256C	COX7	subunit VII of cytochrome c oxidase

```
YOR264W		
```

early_g1: -301 to -203 nt upstream of the ATG start codon: 9 genes

YBL023C	MCM2	Minichromosome maintenance protein, transcription factor

YBR054W	YRO2	Homolog to HSP30 heat shock protein YRO1 (S. cerevisiae) 7

```
YBR157C		
```

YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

```
YMR007W		
```
```
YNR067C		
```
```
YOR264W		
```
```
YPL004C		
```

YPL058C	PDR12	multidrug resistance transporter

early_g1: -202 to -104 nt upstream of the ATG start codon: 6 genes

YBR054W	YRO2	Homolog to HSP30 heat shock protein YRO1 (S. cerevisiae) 7

YBR083W	TEC1	transcription factor of the TEA/ATTS DNA-binding domain family, regulator of Ty1 expression

```
YCL040W	GLK1	Glucokinase
```
```
YDL181W	INH1	ATPase inhibitor
```
```
YHL026C		
```
```
YIL009W	FAA3	Acyl CoA synthase
```

early_g1: -103 to -5 nt upstream of the ATG start codon: 7 genes

```
YBR200W	BEM1	contains two SH3 domains
```
```
YBR231C		
```
```
YCL040W	GLK1	Glucokinase
```
```
YDR033W		
```

YDR368W	YPR1	similar to aldo-keto reductase

```
YOR066W		
```

YPR019W	CDC54	Involved in initiation of DNA replication

late_g1: -598 to -500 nt upstream of the ATG start codon: 23 genes

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

YBR252W	DUT1	dUTP pyrophosphatase (dUTPase)

```
YCL022C		
```
```
YCL024W		Ser/Thr protein kinase
```
```
YDL010W		
```
```
YDL156W		
```

YDL227C	HO	Homothallic switching endonuclease

```
YDR013W		
```

YDR097C	MSH6	Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs

```
YDR493W		
```
```
YGL027C	CWH41	glucosidase I
```

YGR041W	BUD9	involved in bud-site selection

```
YHR113W		Vacuolar aminopeptidase
```

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

```
YLR326W		
```
```
YLR376C		
```
```
YLR381W		
```
```
YOR144C		
```
```
YPL267W		
```
```
YPR174C		
```
```
YLR349W		
```
```
YCL061C		
```

late_g1: -499 to -401 nt upstream of the ATG start codon: 6 genes

```
YBR089W		
```
```
YDL119C		
```
```
YDR493W		
```

YDR507C	GIN4	putative serine/threonine kinase

YIL026C	IRR1	involved in cell morphology

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

late_g1: -400 to -302 nt upstream of the ATG start codon: 19 genes

```
YBR089W		
```
```
YCL022C		
```
```
YDL101C	DUN1	protein kinase
```
```
YDL119C		
```
```
YDL156W		
```
```
YDR013W		
```

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YKL165C	MCD4	(putative) involved in cell polarity

```
YKR077W		
```

YLR233C	EST1	involved in telomere length regulation

YNL173C	MDG1	Involved in G-protein mediated signal transduction

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

```
YNL303W		
```
```
YOR144C		
```

YPL124W	NIP29	spindle pole body associated protein

```
YPL127C	HHO1	histone H1
```
```
YPL208W		
```

YPL241C	CIN2	involved in microtubule function

```
YLR236C		
```

late_g1: -301 to -203 nt upstream of the ATG start codon: 8 genes

YDR297W	SUR2	Syringomycin response protein 2

YHR038W	FIL1	Putative mitochondrial ribosome recycling factor

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YLL022C	HIF1	interacts with histone acetyltransferase

YLR032W	RAD5	putative ATPase/DNA helicase

```
YLR376C		
```
```
YOL017W		
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

late_g1: -202 to -104 nt upstream of the ATG start codon: 6 genes

```
YBR089W		
```
```
YGR109C	CLB6	B-type cyclin
```

YGR238C	KEL2	involved in cell fusion and morphology; contains six Kelch repeats

YLR032W	RAD5	putative ATPase/DNA helicase

YML102W	CAC2	p60 subunit of the yeast omatin Assembly Factor-I (CAF-I)

```
YNL310C		
```

late_g1: -103 to -5 nt upstream of the ATG start codon: 7 genes

```
YAR003W		beta transducin domain
```
```
YDL101C	DUN1	protein kinase
```
```
YDL156W		
```

YGR238C	KEL2	involved in cell fusion and morphology; contains six Kelch repeats

YKL165C	MCD4	(putative) involved in cell polarity

YNL273W	TOF1	Interacts with topoisomerase I

```
YPR174C		
```

s: -598 to -500 nt upstream of the ATG start codon: 14 genes

```
YBL063W	KIP1	kinesin related protein
```

YDL197C	ASF2	Anti-silencing protein, involved in transcription

YDR356W	NUF1	component of the spindle pole body that interacts with Spc42p, calmodulin, and a 35 kDa protein

YDR488C	PAC11	similar to rat dynein intermediate chain

YER003C	PMI40	mannose-6-phosphate isomerase

YER016W	BIM1	microtubule-binding protein

```
YER018C	SPC25	component of spindle pole
```
```
YJL115W	ASF1	involved in silencing
```

YJR006W	HYS2	DNA polymerase delta 55 KD subunit

YJR137C	ECM17	Putative sulfite reductase

```
YLR455W		
```

YNL073W	MSK1	mitochondrial lysine-tRNA synthetase

```
YNL176C		
```

YPL016W	SWI1	Zinc-finger transcription factor

s: -499 to -401 nt upstream of the ATG start codon: 8 genes

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

```
YDL096C		
```

YDR252W	BTT1	negative regulator of RNA polymerase II

YER001W	MNN1	Alpha-1,3-mannosyltransferase

YER003C	PMI40	mannose-6-phosphate isomerase

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

YKR010C	TOF2	topoisomerase I interacting factor 2

YOR026W	BUB3	cell cycle checkpoint protein

s: -400 to -302 nt upstream of the ATG start codon: 5 genes

```
YBR184W		
```
```
YDR113C	PDS1	42-kDa nuclear protein
```

YDR488C	PAC11	similar to rat dynein intermediate chain

```
YER018C	SPC25	component of spindle pole
```
```
YOR284W		
```

s: -301 to -203 nt upstream of the ATG start codon: 8 genes

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YDL096C		
```
```
YER019W		
```

YJR155W	AAD10	Hypothetical aryl-alcohol dehydrogenase (AAD)

YNL073W	MSK1	mitochondrial lysine-tRNA synthetase

YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

```
YOL019W		
```
```
YOR284W		
```

s: -202 to -104 nt upstream of the ATG start codon: 3 genes

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

YLR228C	ECM22	involved in cell wall biogenesis (putative)

```
YOR284W		
```

s: -103 to -5 nt upstream of the ATG start codon: 6 genes

```
YDL096C		
```
```
YER118C	SSU81	Transmembrane osmosensor
```

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

```
YLR151C		
```

YMR198W	CIK1	spindle pole body associated protein

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

g2: -598 to -500 nt upstream of the ATG start codon: 5 genes

```
YCR086W		
```
```
YDR451C		
```

YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

```
YMR215W		
```
```
YNR009W		
```

g2: -499 to -401 nt upstream of the ATG start codon: 4 genes

```
YDR324C		
```
```
YDR366C		
```

YIL169C		serine-, threonine-rich protein

```
YOR273C		
```

g2: -400 to -302 nt upstream of the ATG start codon: 5 genes

YCR084C	TUP1	glucose repression regulatory protein, exhibits similarity to beta subunits of G proteins

YJR076C	CDC11	Component of 10 nm filaments of mother-bud neck

```
YJR110W		
```
```
YMR215W		
```
```
YNR009W		
```

g2: -301 to -203 nt upstream of the ATG start codon: 11 genes

```
YBR038W	CHS2	chitin synthase 2
```
```
YBR043C		
```

YCL014W	BUD3	involved in bud site selection

```
YCR073C	SSK22	protein kinase
```
```
YDR451C		
```
```
YJR110W		
```

YKL049C	CSE4	high similarity to histone H3 and to human centromere protein CENP-A

```
YLL046C	RNP1	ribonucleoprotein 1
```
```
YLR015W		
```

YOL012C	HTA3	An evolutionarily conserved member of the histone H2A F/Z family of histone variants

```
YOR073W		
```

g2: -202 to -104 nt upstream of the ATG start codon: 7 genes

```
YCR073C	SSK22	protein kinase
```
```
YCR085W		
```
```
YDR366C		
```

YJL099W	CHS6	involved in chitin biosynthesis

YJL137C	GLG2	glycogen synthesis initiator

YOL012C	HTA3	An evolutionarily conserved member of the histone H2A F/Z family of histone variants

YPR111W	DBF20	kinase required for late nuclear division

g2: -103 to -5 nt upstream of the ATG start codon: 7 genes

```
YBR043C		
```
```
YDR366C		
```

YIL169C		serine-, threonine-rich protein

```
YKL048C	ELM1	protein kinase
```

YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

```
YOR073W		
```

YPR111W	DBF20	kinase required for late nuclear division

m: -598 to -500 nt upstream of the ATG start codon: 7 genes

YAL022C	FUN26	predicted membrane protein

```
YDL138W	RGT2	glucose permease
```
```
YGL116W	CDC20	beta-transducin homolog
```

YGL201C	MCM6	component of MCM initiator complex involved in DNA replication

YJR092W	BUD4	involved in bud site selection

```
YLR190W		
```
```
YPL186C		
```

m: -499 to -401 nt upstream of the ATG start codon: 10 genes

```
YAL040C	CLN3	G(sub)1 cyclin
```
```
YBR138C	HDR1	Unknown
```
```
YDL048C	STP4	involved in tRNA splicing
```

YGR092W	DBF2	Serine/threonine protein kinase

YGR230W	BNS1	similar to Spo12, involved in sporulation

YGR279C	SCW4	soluble cell wall protein; can be released from SDS-extracted cell walls under reducing conditions

```
YLR190W		
```

YMR001C	CDC5	protein kinase which functions at the G(sub)2/M boundary

```
YOL137W		
```
```
YOR315W		
```

m: -400 to -302 nt upstream of the ATG start codon: 9 genes

YGL201C	MCM6	component of MCM initiator complex involved in DNA replication

YGR108W	CLB1	G(sub)2-specific B-type cyclin

YHL028W	WSC4	Putative integral membrane protein containing novel cysteine motif. Similarity to SLG1 (WSC1), WSC2 and WSC3

```
YHR023W	MYO1	Class II Myosin
```

YHR152W	SPO12	20 kDa protein with negatively charged C-terminus required for function; thought to be a positive regulator of exit from M-phase in mitosis and meiosis. Spo12p interacts with Dbf2p and Dbf20p protein kinases.

```
YOL014W		
```
```
YOL070C		
```

YOR025W	HST3	involved in telomeric silencing

YPL242C	IQG1	Similar to mammalian IQGAP proteins

m: -301 to -203 nt upstream of the ATG start codon: 14 genes

```
YBR138C	HDR1	Unknown
```

YGR092W	DBF2	Serine/threonine protein kinase

```
YHR151C		
```

YHR152W	SPO12	20 kDa protein with negatively charged C-terminus required for function; thought to be a positive regulator of exit from M-phase in mitosis and meiosis. Spo12p interacts with Dbf2p and Dbf20p protein kinases.

```
YIL161W		
```
```
YIL167W		
```

YJL079C	PRY1	Similar to plant PR-1 class of pathogen related proteins

```
YKL129C	MYO3	myosin I
```
```
YML034W		
```
```
YNL057W		
```
```
YNL058C		
```
```
YOR229W	WTM2	Transcriptional modulator
```
```
YPL186C		
```
```
YPR157W		
```

m: -202 to -104 nt upstream of the ATG start codon: 6 genes

YGR143W	SKN1	encodes a predicted type II membrane protein highly homologous to Kre6p

```
YKL129C	MYO3	myosin I
```

YLR131C	ACE2	zinc finger transcription factor

YNL053W	MSG5	Dual-specificity protein tyrosine phosphatase

```
YNL058C		
```

YPL242C	IQG1	Similar to mammalian IQGAP proteins

m: -103 to -5 nt upstream of the ATG start codon: 4 genes

```
YGL116W	CDC20	beta-transducin homolog
```

YIL162W	SUC2	invertase (sucrose hydrolyzing enzyme)

```
YKL130C	SHE2	involved in cell polarity
```

YPR167C	MET16	3'phosphoadenylylsulfate reductase

From Table IIa: Position-dependent, orientation-independent pentamers AACCC and/or GGGTT are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

From Table IIa: Position-dependent, orientation-independent pentamers
AACCC and/or GGGTT
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals: