Position independent CGCGTC

From Table Ia: Position-independent, orientation-independent hexamers
CGCGTC and/or GACGCG
are found in the upstream regions of these cell cycle-regulated yeast genes:

early_g1: 12 genes

```
YCL040W	GLK1	Glucokinase
```
```
YDL181W	INH1	ATPase inhibitor
```
```
YER111C	SWI4	transcription factor
```

YGR183C	QCR9	7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex

YHR005C	GPA1	alpha subunit of G protein coupled to mating factor receptors

YJL194W	CDC6	pre-initiation complex component

```
YLR049C		
```

YLR079W	SIC1	Cdc28p-Clb5 protein kinase inhibitor

```
YLR254C		
```
```
YML109W	ZDS2	Zds1 homolog
```

YML110C	COQ5	Putative mitochondrial C-methyltransferase

```
YMR007W		
```

late_g1: 64 genes

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

```
YDL010W		
```

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL101C	DUN1	protein kinase
```
```
YDL127W	PCL2	G1 cyclin
```

YDR097C	MSH6	Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs

YDR297W	SUR2	Syringomycin response protein 2

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YDR383C		
```

YDR507C	GIN4	putative serine/threonine kinase

```
YER070W	RNR1	ribonucleotide reductase
```

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

```
YGR109C	CLB6	B-type cyclin
```

YGR152C	RSR1	GTP-binding protein, ras superfamily

YHR110W	ERP5	p24 protein involved in membrane trafficking

```
YHR153C	SPO16	sporulation protein
```
```
YHR154W	ESC4	involved in silencing
```

YIL026C	IRR1	involved in cell morphology

YIL159W	BNR1	involved in actin filament organization

YJL074C	SMC3	involved in sister chromatid cohesion

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YJL173C	RFA3	subunit 3 of replication factor-A

```
YJL181W		
```
```
YJL187C	SWE1	protein kinase homolog
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YKL042W	SPC42	component of the spindle pole body

YKL045W	PRI2	p58 polypeptide of DNA primase

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

```
YKR077W		
```

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YLL022C	HIF1	interacts with histone acetyltransferase

YLR032W	RAD5	putative ATPase/DNA helicase

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

```
YLR381W		
```

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

YLR383W	RHC18	involved in recombination repair

```
YLR457C	NBP1	Nap1p binding protein
```

YML027W	YOX1	Homeobox-domain containing protein

YML060W	OGG1	43-kDa 8-oxo-guanine DNA glycosylase

```
YML061C	PIF1	5' to 3' DNA helicase
```

YMR179W	SPT21	non-specific DNA binding protein

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

YNL273W	TOF1	Interacts with topoisomerase I

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

```
YNL300W		
```
```
YNL310C		
```
```
YOR074C	CDC21	Thymidylate synthase
```
```
YPL014W		
```

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

```
YPL127C	HHO1	histone H1
```

YPL153C	RAD53	protein kinase, Mec1p and Tel1p regulate rad53p phosphorylation

YPL241C	CIN2	involved in microtubule function

```
YPL267W		
```

YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

```
YPR120C	CLB5	B-type cyclin
```
```
YPR174C		
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

s: 13 genes

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

```
YBR007C		
```

YCR065W	HCM1	Transcription factor (fork head domain)

YDL197C	ASF2	Anti-silencing protein, involved in transcription

```
YDR113C	PDS1	42-kDa nuclear protein
```

YER003C	PMI40	mannose-6-phosphate isomerase

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YIL140W	SRO4	localizes to the plasma membrane

YJR006W	HYS2	DNA polymerase delta 55 KD subunit

YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

```
YMR048W		
```
```
YOL019W		
```
```
YOR284W		
```

g2: 5 genes

```
YBL032W		
```
```
YDR451C		
```
```
YJL092W	HPR5	DNA helicase
```
```
YMR003W		
```
```
YNR009W		
```

m: 0 genes

From Table Ia: Position-independent, orientation-independent hexamers CGCGTC and/or GACGCG are found in the upstream regions of these cell cycle-regulated yeast genes:

From Table Ia: Position-independent, orientation-independent hexamers
CGCGTC and/or GACGCG
are found in the upstream regions of these cell cycle-regulated yeast genes: