From Table Ib: Position-independent, orientation-dependent hexamers

CGCGAA
is found in the upstream regions of these cell cycle-regulated yeast genes:

early_g1: 4 genes

• YER111C	SWI4	transcription factor

• YLL040C	VPS13	component of peripheral vacuolar membrane protein complex

• YLR273C	PIG1	Protein similar to Gac1p, a putative type 1 protein phosphatase targeting subunit

• YLR274W	CDC46	MCM initiator complex protein

late_g1: 38 genes

• YBR070C		involved in osmotolerance

• YBR073W	RDH54	Putative helicase similar to RAD54

• YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

• YBR278W	DPB3	C and C' subunits of DNA polymerase II

• YDL010W		

• YDL127W	PCL2	G1 cyclin

• YDL164C	CDC9	DNA ligase

• YDL227C	HO	Homothallic switching endonuclease

• YDR013W		

• YDR507C	GIN4	putative serine/threonine kinase

• YGR152C	RSR1	GTP-binding protein, ras superfamily

• YHR038W	FIL1	Putative mitochondrial ribosome recycling factor

• YHR153C	SPO16	sporulation protein

• YJL187C	SWE1	protein kinase homolog

• YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

• YKL042W	SPC42	component of the spindle pole body

• YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

• YKL165C	MCD4	(putative) involved in cell polarity

• YKR013W	PRY2	Similar to plant PR-1 class of pathogen related proteins

• YKR077W		

• YKR083C		

• YLR183C		

• YLR234W	TOP3	DNA Topoisomerase III

• YLR326W		

• YLR376C		

• YLR381W		

• YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

• YML027W	YOX1	Homeobox-domain containing protein

• YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

• YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

• YNL300W		

• YNL309W	STB1	Interacts with the putative transcription factor Sin3p

• YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

• YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

• YPL124W	NIP29	spindle pole body associated protein

• YPL241C	CIN2	involved in microtubule function

• YPR120C	CLB5	B-type cyclin

• YPR174C		

s: 12 genes

• YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

• YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

• YBR156C		

• YBR275C	RIF1	RAP1-interacting factor, involved in establishment of repressed chromatin

• YCR065W	HCM1	Transcription factor (fork head domain)

• YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

• YEL061C	CIN8	kinesin-related protein involved in establishment and maintenance of mitotic spindle

• YER001W	MNN1	Alpha-1,3-mannosyltransferase

• YHR061C	GIC1	interacts with GTPase, involved in bud emergence

• YIL140W	SRO4	localizes to the plasma membrane

• YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

• YOR026W	BUB3	cell cycle checkpoint protein

g2: 7 genes

• YBL097W	BRN1	involved in chromosome maintenance; similar to Drosophila barren, Xenopus XCAP-H, and human BRRN1

• YCL063W		

• YCR073C	SSK22	protein kinase

• YDR389W	SAC7	GTPase activating protein (GAP) for RHO1

• YIL158W		

• YJL092W	HPR5	DNA helicase

• YKL049C	CSE4	high similarity to histone H3 and to human centromere protein CENP-A

m: 0 genes