From Table Ia: Position-independent, orientation-independent hexamers

CGACGC and/or GCGTCG
are found in the upstream regions of these cell cycle-regulated yeast genes:

early_g1: 7 genes

• YBR157C		

• YGR183C	QCR9	7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex

• YHL026C		

• YJL194W	CDC6	pre-initiation complex component

• YKL150W	MCR1	NADH-cytochrome b5 reductase

• YLR050C		

• YLR079W	SIC1	Cdc28p-Clb5 protein kinase inhibitor

late_g1: 34 genes

• YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

• YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

• YDL018C	ERP3	p24 protein involved in membrane trafficking

• YDL101C	DUN1	protein kinase

• YGL089C	MF(ALPHA)2	alpha mating factor

• YIL026C	IRR1	involved in cell morphology

• YJL074C	SMC3	involved in sister chromatid cohesion

• YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

• YJL187C	SWE1	protein kinase homolog

• YJL196C	ELO1	Elongation enzyme 1

• YKL042W	SPC42	component of the spindle pole body

• YKL045W	PRI2	p58 polypeptide of DNA primase

• YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

• YLL002W	KIM2	diepoxybutane and mitomycin C resistance

• YLR032W	RAD5	putative ATPase/DNA helicase

• YLR103C	CDC45	omosomal DNA replication initiation protein

• YLR381W		

• YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

• YLR383W	RHC18	involved in recombination repair

• YML027W	YOX1	Homeobox-domain containing protein

• YML102W	CAC2	p60 subunit of the yeast omatin Assembly Factor-I (CAF-I)

• YMR179W	SPT21	non-specific DNA binding protein

• YNL102W	POL1	DNA polymerase I alpha subunit, p180

• YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

• YNL273W	TOF1	Interacts with topoisomerase I

• YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

• YNL300W		

• YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

• YPL127C	HHO1	histone H1

• YPL241C	CIN2	involved in microtubule function

• YPR120C	CLB5	B-type cyclin

• YLR349W		

• YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

• YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

s: 11 genes

• YCR065W	HCM1	Transcription factor (fork head domain)

• YDL096C		

• YDL197C	ASF2	Anti-silencing protein, involved in transcription

• YHR061C	GIC1	interacts with GTPase, involved in bud emergence

• YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

• YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

• YNL073W	MSK1	mitochondrial lysine-tRNA synthetase

• YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

• YOL019W		

• YOR284W		

• YPL016W	SWI1	Zinc-finger transcription factor

g2: 1 genes

• YNR009W		

m: 0 genes