From Table Ib: Position-independent, orientation-dependent hexamers

CCCTTT
is found in the upstream regions of these cell cycle-regulated yeast genes:

early_g1: 23 genes

• YBR053C		

• YBR054W	YRO2	Homolog to HSP30 heat shock protein YRO1 (S. cerevisiae) 7

• YBR067C	TIP1	cell wall mannoprotein

• YBR083W	TEC1	transcription factor of the TEA/ATTS DNA-binding domain family, regulator of Ty1 expression

• YBR157C		

• YBR158W		

• YBR231C		

• YCL040W	GLK1	Glucokinase

• YDR033W		

• YDR368W	YPR1	similar to aldo-keto reductase

• YER111C	SWI4	transcription factor

• YGR035C		

• YHR005C	GPA1	alpha subunit of G protein coupled to mating factor receptors

• YHR022C		RAS-related protein

• YKL150W	MCR1	NADH-cytochrome b5 reductase

• YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

• YLR274W	CDC46	MCM initiator complex protein

• YMR256C	COX7	subunit VII of cytochrome c oxidase

• YNR001C	CIT1	citrate synthase. Nuclear encoded mitochondrial protein.

• YNR016C	ACC1	acetyl-CoA carboxylase

• YNR067C		

• YOR066W		

• YPL004C		

late_g1: 13 genes

• YCL022C		

• YCL024W		Ser/Thr protein kinase

• YDL101C	DUN1	protein kinase

• YDL156W		

• YDL164C	CDC9	DNA ligase

• YIL159W	BNR1	involved in actin filament organization

• YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

• YLR183C		

• YLR383W	RHC18	involved in recombination repair

• YOR074C	CDC21	Thymidylate synthase

• YPL208W		

• YPL256C	CLN2	G(sub)1 cyclin

• YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

s: 10 genes

• YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

• YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

• YCR065W	HCM1	Transcription factor (fork head domain)

• YDL094C		

• YER018C	SPC25	component of spindle pole

• YJL115W	ASF1	involved in silencing

• YKL067W	YNK1	Nucleoside diphosphate kinase

• YLR455W		

• YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

• YOR026W	BUB3	cell cycle checkpoint protein

g2: 11 genes

• YBL032W		

• YBR038W	CHS2	chitin synthase 2

• YCL063W		

• YDR324C		

• YDR451C		

• YGL255W	ZRT1	high-affinity zinc transport protein

• YIL158W		

• YJR076C	CDC11	Component of 10 nm filaments of mother-bud neck

• YKL048C	ELM1	protein kinase

• YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

• YOR073W		

m: 21 genes

• YAL040C	CLN3	G(sub)1 cyclin

• YDL048C	STP4	involved in tRNA splicing

• YDL138W	RGT2	glucose permease

• YGL021W	ALK1	DNA damage-responsive protein

• YGL201C	MCM6	component of MCM initiator complex involved in DNA replication

• YGR092W	DBF2	Serine/threonine protein kinase

• YGR143W	SKN1	encodes a predicted type II membrane protein highly homologous to Kre6p

• YGR279C	SCW4	soluble cell wall protein; can be released from SDS-extracted cell walls under reducing conditions

• YHR023W	MYO1	Class II Myosin

• YHR151C		

• YJL051W		

• YJR092W	BUD4	involved in bud site selection

• YKL129C	MYO3	myosin I

• YKL130C	SHE2	involved in cell polarity

• YLR131C	ACE2	zinc finger transcription factor

• YLR190W		

• YML034W		

• YMR032W	HOF1	SH3 domain containing-protein

• YNL053W	MSG5	Dual-specificity protein tyrosine phosphatase

• YOR229W	WTM2	Transcriptional modulator

• YPL186C