Position independent ACGCGT

From Table Ia: Position-independent, orientation-independent hexamers
ACGCGT and/or ACGCGT
are found in the upstream regions of these cell cycle-regulated yeast genes:

early_g1: 11 genes

```
YBR231C		
```
```
YCL040W	GLK1	Glucokinase
```
```
YER111C	SWI4	transcription factor
```
```
YGR281W	YOR1	ABC transporter
```

YJL194W	CDC6	pre-initiation complex component

```
YLR049C		
```

YLR273C	PIG1	Protein similar to Gac1p, a putative type 1 protein phosphatase targeting subunit

YLR274W	CDC46	MCM initiator complex protein

```
YML109W	ZDS2	Zds1 homolog
```

YML110C	COQ5	Putative mitochondrial C-methyltransferase

```
YMR007W		
```

late_g1: 67 genes

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

```
YCL024W		Ser/Thr protein kinase
```

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

```
YDL010W		
```

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL101C	DUN1	protein kinase
```

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YDL105W	QRI2	
```
```
YDL156W		
```
```
YDL164C	CDC9	DNA ligase
```

YDR097C	MSH6	Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs

YDR297W	SUR2	Syringomycin response protein 2

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YDR383C		
```

YDR507C	GIN4	putative serine/threonine kinase

```
YER070W	RNR1	ribonucleotide reductase
```

YFL008W	SMC1	omosome segregation protein

```
YGR109C	CLB6	B-type cyclin
```

YHR110W	ERP5	p24 protein involved in membrane trafficking

```
YHR153C	SPO16	sporulation protein
```
```
YHR154W	ESC4	involved in silencing
```

YIL026C	IRR1	involved in cell morphology

YIL159W	BNR1	involved in actin filament organization

YJL074C	SMC3	involved in sister chromatid cohesion

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

```
YJL181W		
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YKL042W	SPC42	component of the spindle pole body

YKL045W	PRI2	p58 polypeptide of DNA primase

YKL108W	SLD2	Synthetically lethal with dpb11-1; required for DNA replication

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

```
YKR077W		
```

YLL022C	HIF1	interacts with histone acetyltransferase

YLR032W	RAD5	putative ATPase/DNA helicase

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

YLR383W	RHC18	involved in recombination repair

```
YLR457C	NBP1	Nap1p binding protein
```
```
YML021C	UNG1	uracil DNA glycosylase
```

YML027W	YOX1	Homeobox-domain containing protein

YMR179W	SPT21	non-specific DNA binding protein

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

```
YNL262W	POL2	DNA polymerase II
```

YNL273W	TOF1	Interacts with topoisomerase I

```
YNL310C		
```

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

```
YOL017W		
```
```
YOR074C	CDC21	Thymidylate synthase
```
```
YOR144C		
```
```
YPL014W		
```

YPL153C	RAD53	protein kinase, Mec1p and Tel1p regulate rad53p phosphorylation

```
YPL208W		
```
```
YPL209C	IPL1	Protein kinase
```

YPL241C	CIN2	involved in microtubule function

```
YPL267W		
```

YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

```
YPR174C		
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

s: 16 genes

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

```
YBR007C		
```

YCR065W	HCM1	Transcription factor (fork head domain)

YDL197C	ASF2	Anti-silencing protein, involved in transcription

```
YDR113C	PDS1	42-kDa nuclear protein
```

YDR356W	NUF1	component of the spindle pole body that interacts with Spc42p, calmodulin, and a 35 kDa protein

YER016W	BIM1	microtubule-binding protein

```
YER118C	SSU81	Transmembrane osmosensor
```

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

YIL140W	SRO4	localizes to the plasma membrane

```
YJL115W	ASF1	involved in silencing
```

YJR006W	HYS2	DNA polymerase delta 55 KD subunit

```
YMR048W		
```
```
YOR284W		
```

g2: 0 genes

m: 1 genes

YIL162W	SUC2	invertase (sucrose hydrolyzing enzyme)

From Table Ia: Position-independent, orientation-independent hexamers ACGCGT and/or ACGCGT are found in the upstream regions of these cell cycle-regulated yeast genes:

From Table Ia: Position-independent, orientation-independent hexamers
ACGCGT and/or ACGCGT
are found in the upstream regions of these cell cycle-regulated yeast genes: