Position independent ACGCGA

From Table Ia: Position-independent, orientation-independent hexamers
ACGCGA and/or TCGCGT
are found in the upstream regions of these cell cycle-regulated yeast genes:

early_g1: 8 genes

YBL023C	MCM2	Minichromosome maintenance protein, transcription factor

```
YER111C	SWI4	transcription factor
```

YJL194W	CDC6	pre-initiation complex component

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YLR049C		
```

YLR079W	SIC1	Cdc28p-Clb5 protein kinase inhibitor

```
YLR254C		
```
```
YNL078W		
```

late_g1: 66 genes

```
YAR003W		beta transducin domain
```
```
YBR070C		involved in osmotolerance
```
```
YBR071W		
```

YBR073W	RDH54	Putative helicase similar to RAD54

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

YBR278W	DPB3	C and C' subunits of DNA polymerase II

```
YCL024W		Ser/Thr protein kinase
```

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL101C	DUN1	protein kinase
```
```
YDL127W	PCL2	G1 cyclin
```
```
YDL164C	CDC9	DNA ligase
```
```
YDR013W		
```
```
YGL027C	CWH41	glucosidase I
```
```
YGL028C	SCW11	soluble cell wall protein
```

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

```
YGR109C	CLB6	B-type cyclin
```

YGR152C	RSR1	GTP-binding protein, ras superfamily

YHR110W	ERP5	p24 protein involved in membrane trafficking

```
YHR113W		Vacuolar aminopeptidase
```
```
YHR153C	SPO16	sporulation protein
```
```
YHR154W	ESC4	involved in silencing
```

YIL026C	IRR1	involved in cell morphology

YJL074C	SMC3	involved in sister chromatid cohesion

YJL173C	RFA3	subunit 3 of replication factor-A

```
YJL187C	SWE1	protein kinase homolog
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YKL045W	PRI2	p58 polypeptide of DNA primase

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YKL165C	MCD4	(putative) involved in cell polarity

```
YKR077W		
```
```
YKR083C		
```

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YLL022C	HIF1	interacts with histone acetyltransferase

```
YLR183C		
```

YLR233C	EST1	involved in telomere length regulation

```
YLR234W	TOP3	DNA Topoisomerase III
```

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

```
YLR326W		
```
```
YLR376C		
```
```
YLR381W		
```

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

YLR383W	RHC18	involved in recombination repair

YML027W	YOX1	Homeobox-domain containing protein

YMR078C	CTF18	(putative) involved in chromosome transmission during mitosis

YMR179W	SPT21	non-specific DNA binding protein

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

```
YNL300W		
```

YNL309W	STB1	Interacts with the putative transcription factor Sin3p

```
YNL310C		
```

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

YPL124W	NIP29	spindle pole body associated protein

```
YPL127C	HHO1	histone H1
```

YPL241C	CIN2	involved in microtubule function

```
YPL267W		
```
```
YPR174C		
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

s: 22 genes

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

YBR276C	PPS1	dual specificity protein phosphatase

YCR065W	HCM1	Transcription factor (fork head domain)

YDL197C	ASF2	Anti-silencing protein, involved in transcription

```
YDR179C		
```

YDR252W	BTT1	negative regulator of RNA polymerase II

YEL061C	CIN8	kinesin-related protein involved in establishment and maintenance of mitotic spindle

YER003C	PMI40	mannose-6-phosphate isomerase

YER016W	BIM1	microtubule-binding protein

```
YER118C	SSU81	Transmembrane osmosensor
```

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YIL140W	SRO4	localizes to the plasma membrane

YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

```
YLR151C		
```

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

```
YOL019W		
```

YPL016W	SWI1	Zinc-finger transcription factor

g2: 6 genes

YBL097W	BRN1	involved in chromosome maintenance; similar to Drosophila barren, Xenopus XCAP-H, and human BRRN1

```
YCR073C	SSK22	protein kinase
```
```
YIL158W		
```
```
YJL092W	HPR5	DNA helicase
```
```
YMR003W		
```
```
YNR009W		
```

m: 1 genes

```
YLR190W		
```

From Table Ia: Position-independent, orientation-independent hexamers ACGCGA and/or TCGCGT are found in the upstream regions of these cell cycle-regulated yeast genes:

From Table Ia: Position-independent, orientation-independent hexamers
ACGCGA and/or TCGCGT
are found in the upstream regions of these cell cycle-regulated yeast genes: