From Table Ib: Position-independent, orientation-dependent hexamers

ACGCGA
is found in the upstream regions of these cell cycle-regulated yeast genes:

early_g1: 3 genes

• YER111C	SWI4	transcription factor

• YJL194W	CDC6	pre-initiation complex component

• YNL078W		

late_g1: 39 genes

• YAR003W		beta transducin domain

• YBR070C		involved in osmotolerance

• YBR073W	RDH54	Putative helicase similar to RAD54

• YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

• YBR278W	DPB3	C and C' subunits of DNA polymerase II

• YDL101C	DUN1	protein kinase

• YDL127W	PCL2	G1 cyclin

• YDL164C	CDC9	DNA ligase

• YDR013W		

• YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

• YGR152C	RSR1	GTP-binding protein, ras superfamily

• YHR153C	SPO16	sporulation protein

• YIL026C	IRR1	involved in cell morphology

• YJL074C	SMC3	involved in sister chromatid cohesion

• YJL173C	RFA3	subunit 3 of replication factor-A

• YJL187C	SWE1	protein kinase homolog

• YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

• YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

• YKL165C	MCD4	(putative) involved in cell polarity

• YKR077W		

• YKR083C		

• YLL002W	KIM2	diepoxybutane and mitomycin C resistance

• YLR183C		

• YLR234W	TOP3	DNA Topoisomerase III

• YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

• YLR326W		

• YLR376C		

• YLR381W		

• YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

• YML027W	YOX1	Homeobox-domain containing protein

• YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

• YNL300W		

• YNL309W	STB1	Interacts with the putative transcription factor Sin3p

• YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

• YPL124W	NIP29	spindle pole body associated protein

• YPL241C	CIN2	involved in microtubule function

• YPR174C		

• YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

• YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

s: 10 genes

• YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

• YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

• YCR065W	HCM1	Transcription factor (fork head domain)

• YDL197C	ASF2	Anti-silencing protein, involved in transcription

• YDR252W	BTT1	negative regulator of RNA polymerase II

• YEL061C	CIN8	kinesin-related protein involved in establishment and maintenance of mitotic spindle

• YER016W	BIM1	microtubule-binding protein

• YHR061C	GIC1	interacts with GTPase, involved in bud emergence

• YIL140W	SRO4	localizes to the plasma membrane

• YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

g2: 5 genes

• YBL097W	BRN1	involved in chromosome maintenance; similar to Drosophila barren, Xenopus XCAP-H, and human BRRN1

• YCR073C	SSK22	protein kinase

• YIL158W		

• YJL092W	HPR5	DNA helicase

• YMR003W		

m: 0 genes