Supplementary material from different publications

Please click on the links to access the supplementary information.

2008

Burroughs AM, Jaffee M, Iyer LM, Aravind L. (2008). Anatomy of the E2 ligase fold: Implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation. J Struct Biol. In Press. Supplementary material.

Abhiman S, Iyer LM, Aravind L. (2008) BEN: a novel domain in chromatin factors and DNA viral proteins. Bioinformatics;24(4):458-61. Open Acess article, Supplementary material

Iyer L.M., Anantharaman V., Wolf M.Y., Aravind L. (2008). Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes. Int J Parasitol. 38(1):1-31.

2007

Burroughs, A.M., Iyer, L.M., Aravind, L. (2007) Comparative Genomics and Evolutionary Trajectories of Viral ATP Dependent DNA-Packaging Systems. In Gene and Protein Evolution, Genome dynamics. Basel, Karger, Editor: Volff, J.N.; 3: 48-65.

Iyer L.M., Anantharaman V., Aravind L. (2007)The DOMON domains are involved in heme and sugar recognition.. Bioinformatics;23(20):2660-4.

Anantharaman V, Iyer L.M., Balaji S., Aravind L.(2007) Adhesion molecules and other secreted host-interaction determinants in apicomplexa: insights from comparative genomics. Int Rev Cytol;262:1-74.

2006

Iyer, L.M., Burroughs, A.M., Aravind, L. (2006) The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains. Genome Biol.: 7(7):R60. Supp file 1, Supp file 2 Supp file3.

Iyer, L.M., Aravind, L. (2006). Phyletic Distribution And Evolutionary Relatedness Of Proteins Involved In Prereplication Complex Assembly. In DNA Replication and Human Disease Cold Spring Harbor Laboratory Press, Cold Spring Harbor , NY.

Iyer, L.M., Babu, M.M., Aravind, L. (2006). The HIRAN domain and recruitment of chromatin remodeling and repair activities to damaged DNA. Cell Cycle: 5(7):775-82.

Iyer LM, Burroughs AM, Aravind L. (2006). The ASCH superfamily: novel domains with a fold related to the PUA domain and a potential role in RNA metabolism. Bioinformatics. 2006 Feb 1;22(3):257-63.

2005

Iyer L.M., Koonin E.V., Leipe D.D., Aravind L. (2005). Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members.. Nucleic Acids Res. 33(12):3875-3896

L. Aravind, Anantharaman, V., Balaji, S., Babu, M.M., Iyer, L.M. (2005). The many faces of the helix-turn-helix domain: Transcription regulation and beyond. FEMS Micr. Rev. 2005 Apr;29(2):231-262. Supp(gis), Supp (alignments).

2004

Iyer, L.M., Leipe, D.D., Koonin, E.V. Aravind, L. (2004). Evolutionary history and higher order classification of AAA+ ATPases. J Str. Biol. 146(1-2):11-31

2002

Iyer LM, Koonin EV, Aravind L. (2002). Extensive domain shuffling in transcription regulators of DNA viruses and implications for the origin of fungal APSES transcription factors.

Genome Biol. 3(3):RESEARCH0012.

2001

Iyer, L.M., Koonin, E.V., and Aravind, L (2001). Adaptations of the helix-grip fold for ligand binding and catalysis in the START domain superfamily. Proteins. 43(2):134-44.

This page was last updated on: 25th Feb 2008