Yang Huang 　 Computational Biology Branch, NCBI, NLM, NIH 8600 Rockville Pike, Room 8N811I Bethesda, MD 20894 USA Phone: (301) 496-7202 Fax: (301)480-4637 Email:

　

    I am a Research Fellow in the Computational Biology Branch of National Center for Biotechnology Information (NCBI) at National Institutes of Health (NIH). I am working with Principle Investigator Dr. Teresa Przytycka. Before joining NCBI, I got my Ph.D. degree in Computer Science from Rutgers University, where I worked with my advisor Dr. Martin Farach-Colton. 

Research 

    My current research interests are in combinatorial methods and algorithm design in bioinformatics and proteomics, biological network evolution, large-scale gene-expression analysis, genome sequence analysis. More about my research.

Publications

Tobias Warnecke, Yang Huang, Teresa Przytycka, Laurence Hurst,

Unique cost dynamics elucidate the role of frame-shifting errors in promoting translational robustness,

Genome Biology and Evolution, Vol. 2, p636-645, 2010.

Yang Huang*, Jie Zheng* and Teresa Przytycka (* co-first authors),

    Discovery of regulatory mechanisms by genome-wide association of gene expression variation,

Biological Data Mining, Jake Chen and Stefano Lonardi (Ed.), CRC Press, 2009.

    Yang Huang, Eugene Koonin, David Lipman and Teresa Przytycka,

Selection for minimization of translational frameshifting errors as a factor in the evolution of codon usage,

Nucleic Acids Research, Vol. 37(20), p6799-6810, 2009.

　

    Yang Huang, Stefan Wuchty, Michael Ferdig and Teresa Przytycka,

Graph theoretical approach to study eQTL: a case study of Plasmodium falciparum,

Bioinformatics, Vol. 25, No. 12, 2009, i15-i20.

    (also appear in Proc. 17th Intl. Conf. on Intelligent Systems for Molecular Biology ISMB'09)

　

Martin Farach-Colton and Yang Huang,

A linear delay algorithm for building concept lattices,

19th Symposium on Combinatorial Pattern Matching (CPM'08), 2008, p204-216   

　

    Yang Huang and Martin Farach-Colton, 

Lattice based clustering of temporal gene-expression matrices, 

7th SIAM International Conference on Data Mining (SDM'07), 2007, p398-409.

    Featured in Clawing Out Clusters in Temporal Gene Expression on Bioscience Technology, September 2007 issue.

Vicky Choi, Yang Huang, Vy Lam, Dustin Potter, Reinhard Laubenbacher and Karen Duca, 

Using formal concept analysis for microarray data comparison, 

Journal of Bioinformatics and Computational Biology, Vol. 6, No. 1, 2008, p65-75.

(also appear in Proc. 5th Asia Pacific Bioinformatics Conference APBC'07)

Martin Farach-Colton, Yang Huang and John Woolford, 

Discovering temporal relations in molecular pathways using protein-protein interactions,  

Proc. 10th International Conference on Research in Computational Molecular Biology (RECOMB'04), San Diego, 2004, p150-156.

    Yang Huang, Dimitrij Frishman and Ilya Muchnik, 

Predicting protein-protein interactions by a supervised learning classifier, 
    Computational Biology and Chemistry, Vol. 28, 2004, p291-301.

    Yang Huang and Kefei Chen, 

    How to transfer confidential information over quantum channel,  

2nd International Workshop on Information Security Application (WISA'01), Seoul, Korea, 2001.

Links

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Last updated on Nov. 23rd, 2011. This page will be constantly updated.