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Rezarta Islamaj Doğan's Research Page

Rezarta Islamaj Doğan, PhD
Research Fellow
NCBI, NLM, NIH
8600 Rockville Pike
Building 38A,10N-003D
Bethesda, MD 20894

Tel: (1) (301) 435 8769
Email: Rezarta.Islamaj AT nih.gov

PhD, Computer Science,
   University of Maryland at College Park, USA, 2007

Online CV
Research Interests:

  • Information retrieval in biomedical literature
  • Machine learning, data mining, feature generation
  • Computational biology

Selected Publications:

A context-blocks model for identifying clinical relationships in patient records
with Aurélie Névéol and Zhiyong Lu
BMC Bioinformatics 2011. BMC Bioinformatics-link

Click-words: Learning to Predict Document Keywords from a User Perspective
with Zhiyong Lu
Bioinformatics 2010. Article in PubMed Central

Extracting Rx Information from Clinical Narrative
with James G. Mork, Olivier Bodenreider, Dina Demner-Fushman, François-Michel Lang, Zhiyong Lu,
Aurélie Névéol, Lee Peters, Sonya E. Shooshan and Alan R. Aronson
JAMIA 2010. JAMIA-link to fulltext

Understanding PubMed® user search behavior through log analysis
with G. Craig Murray, Aurélie Névéol, and Zhiyong Lu
Database, 2009. Article in PubMed Central

Features Generated for Computational Splice-Site Prediction Correspond
to Functional Elements

with Lise Getoor, W. John Wilbur and Stephen M. Mount
BMC Bioinformatics, 2007. Article in PubMed Central

SplicePort: An Interactive Splice-Site Analysis Tool
with Lise Getoor, W. John Wilbur and Stephen M. Mount
Nucleic Acids Research, 2007.Article in PubMed Central

A Feature Generation Algorithm with Applications to Biological Sequence Classification
with Lise Getoor and W. John Wilbur
Chapter in Computational Methods of Feature Selection, Huan Liu and Hiroshi Motoda editors, 2007. SPRINGER-link

Structural footprinting in protein structure comparison: The impact of structural fragments.
with Elena Zotenko, W. John Wilbur, Diane P. O'Leary and Teresa M. Przytycka
BMC Structural Biology, 2007.Article in PubMed Central

All Publications

Revised: March 14, 2012.


New:

Information Retrieval and Knowledge Discovery in Biomedical Text at AAAI Fall Symposia 2012

Call for Papers

See also:

Supplementary data (Click on link for project description):

PubMed Logs Study

Click-words Study



Past Events:

Machine Learning for Biomedical Literature Analysis and Text Retrieval at ICMLA 2011

Call for Papers


BMC Bioinformatics Supplement on Machine Learning for Biomedical Text Analysis

Link to BMC supplement

Machine Learning for Biomedical Literature Analysis and Text Retrieval

at ICMLA 2010