NCBI Home GenBank Annotation Examples

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GENERAL REQUIREMENTS
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Examples

 mRNA sequence

 Prokaryotic gene

 Eukaryotic gene

 rRNA and/or ITS

 Promoter region

 Viral sequence

 HIV-1

 Transposon or insertion sequence

 Microsatellite

 Repeat regions

 Pseudogene

 Translocation and/or fusion protein

 Cloning vector

 Gapped Sequence

 Phylogenetic or population studies

 EST submissions

 STS submissions

 GSS submissions

 HTGs

 FLICs

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  Promoter Region

Relevant feature information for promoter, genomic 5' flanking sequence, or genomic 3' flanking sequence:
  • protein or gene name for the sequence to which the promoter or flanking region belongs
  • intervals of any transcribed regions or coding regions, if present on the sequence

We strongly suggest that you provide as much of the above information as possible to ensure the most complete annotation of your sequence. If any of this information is not known, please inform us.

Example:

Homo sapiens enhancer-binding protein 2 (EBP2) gene, 
promoter region and partial cds.

FEATURES             Location/Qualifiers

     source          1..3061
                     /organism="Homo sapiens"
                     /chromosome="15"
                     /map="15q13"
                     /cell_line="H441"
                     /tissue_type="lung"
                     
     gene            1..>3061
                     /gene="EBP2"
                     
     promoter        1..2947
                     /gene="EBP2"
                     
     TATA_signal     2918..2923
                     /gene="EBP2"
                     
     mRNA            2948..>3061
                     /gene="EBP2"
                     /product="enhancer-binding protein 2"
                     
     5'UTR           2948..3010
                     /gene="EBP2"
                     
     CDS             3011..>3061
                     /gene="EBP2"
                     /product="enhancer-binding protein 2"


 

Revised November 28, 2000