NCBI Home GenBank Annotation Examples

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GENERAL REQUIREMENTS
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Examples

 mRNA sequence

 Prokaryotic gene

 Eukaryotic gene

 rRNA and/or ITS

 Promoter region

 Viral sequence

 HIV-1

 Transposon or insertion sequence

 Microsatellite

 Repeat regions

 Pseudogene

 Translocation and/or fusion protein

 Cloning vector

 Segmented set of exons/introns

 Phylogenetic or population studies

 EST submissions

 STS submissions

 GSS submissions

 HTGs

 FLICs

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  Translocation Breakpoint and/or Fusion Protein

Relevant feature information for a sequence resulting from a chromosomal translocation:
  • nucleotide location of the translocation breakpoint, if known
  • map information for the translocation breakpoint (e.g., t(18;X)(q11.2;p11.2)
if the translocation results in a fusion protein, please include:

  • coding region intervals, including start and stop codons, if present
  • protein name
  • amino acid sequence, if known


We strongly suggest that you provide as much of the above information as possible to ensure the most complete annotation of your sequence. If any of this information is not known, please inform us.

Example:

Homo sapiens SYT/SSX4 fusion protein mRNA, complete cds.

FEATURES             Location/Qualifiers

     source          1..2935
                     /organism="Homo sapiens"
                     /tissue_type="sarcoma"
                     /map="t(18;X)(q11.2;p11.2)"

     source          1..1242
                     /organism="Homo sapiens"
                     /chromosome="18"
                     /map="18q11.2"

     CDS             1..1479
                     /product="SYT/SSX4 fusion protein"

     source          1243..2935
                     /organism="Homo sapiens"
                     /chromosome="X"
                     /map="Xp11.2"

     3'UTR           1480..2935


 

Revised November 28, 2000