Index

ALIGNMENT_VIEW

Get | ALIGNMENT_VIEW

ALIGNMENTS

Get | ALIGNMENTS | OTHER_ADVANCED

AUTO_FORMAT

Put | AUTO_FORMAT

CMD

CMD

Commands

Commands

COMPOSITION_BASED_STATISTICS

Put | COMPOSITION_BASED_STATISTICS

DATABASE

Put | DATABASE

DB_GENETIC_CODE

Put | DB_GENETIC_CODE

Delete

Delete

DESCRIPTIONS

Get | DESCRIPTIONS | OTHER_ADVANCED

ENDPOINTS

Put | ENDPOINTS

ENTREZ_LINKS_NEW_WINDOW

Get | ENTREZ_LINKS_NEW_WINDOW

ENTREZ_QUERY

Put | ENTREZ_QUERY

EXPECT

Put | EXPECT | OTHER_ADVANCED

EXPECT_HIGH

Get | EXPECT_HIGH

EXPECT_LOW

Get | EXPECT_LOW

FILTER

Put | FILTER | OTHER_ADVANCED

FORMAT_ENTREZ_QUERY

Get | FORMAT_ENTREZ_QUERY

FORMAT_OBJECT

Get | FORMAT_OBJECT | SHOW_OVERVIEW

FORMAT_TYPE

Get | FORMAT_TYPE

GAPCOSTS

Put | GAPCOSTS | OTHER_ADVANCED | OTHER_ADVANCED

GENETIC_CODE

Put | GENETIC_CODE

Get

Get

HITLIST_SIZE

Put | HITLIST_SIZE | OTHER_ADVANCED

I_THRESH

Put | I_THRESH

Info

Info | Info

LAYOUT

Put | LAYOUT

LCASE_MASK

Put | LCASE_MASK

MATRIX_NAME

Put | MATRIX_NAME

MEGABLAST

MEGABLAST

NCBI_GI

Get | NCBI_GI

NUCL_PENALTY

Put | NUCL_PENALTY | OTHER_ADVANCED

NUCL_REWARD

Put | NUCL_REWARD | OTHER_ADVANCED

OTHER_ADVANCED

Put | OTHER_ADVANCED

PAGE

PAGE

PERC_IDENT

Put | PERC_IDENT

PHI_PATTERN

Put | PHI_PATTERN

PROGRAM

Put | PROGRAM

PSSM

PSSM

Put

Put | Put

QUERY

Put | QUERY

QUERY_BELIEVE_DEFLINE

Put | QUERY_BELIEVE_DEFLINE | Using QUERY_BELIEVE_DEFLINE

QUERY_FILE

Put | QUERY_FILE

QUERY_FROM

Put | QUERY_FROM

QUERY_TO

Put | QUERY_TO

RESULTS_FILE

Get | RESULTS_FILE

RID

Get | Delete | RID

SEARCHSP_EFF

Put | OTHER_ADVANCED | SEARCHSP_EFF

SERVICE

Put | Get | SERVICE

SHOW_OVERVIEW

Get | SHOW_OVERVIEW

TARGET

Info | TARGET

THRESHOLD

Put | THRESHOLD

UNGAPPED_ALIGNMENT

Put | UNGAPPED_ALIGNMENT

Web

Web | Web

WORD_SIZE

Put | OTHER_ADVANCED | WORD_SIZE