Index

Put

The 'Put' command - Sends search requests to $QBl_{A}st$ .

Parameters accepted: AUTO_FORMAT, COMPOSITION_BASED_STATISTICS, DATABASE, DB_GENETIC_CODE, ENDPOINTS, ENTREZ_QUERY, EXPECT, FILTER, GAPCOSTS, GENETIC_CODE, HITLIST_SIZE, I_THRESH, LAYOUT, LCASE_MASK, MATRIX_NAME, NUCL_PENALTY, NUCL_REWARD, OTHER_ADVANCED, PERC_IDENT, PHI_PATTERN, PROGRAM, QUERY, QUERY_FILE, QUERY_BELIEVE_DEFLINE, QUERY_FROM, QUERY_TO, SEARCHSP_EFF, SERVICE, THRESHOLD, UNGAPPED_ALIGNMENT, WORD_SIZE

Example:

    http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?\
    CMD=Put&QUERY=MKN&DATABASE=nr&PROGRAM=blastp&FILTER=L&HITLIST_SZE=500