Reference a>: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. RID: B6RA6YUN012 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 15,845,487 sequences; 40,238,095,891 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= gi|163838649|ref|NM_008421.3| Mus musculus potassium voltage gated channel, Shaw-related subfamily, member 1 (Kcnc1), transcript variant B, mRNA Length=7788
Distance tree of results Score E Sequences producing significant alignments: (Bits) Value ref|NM_008421.2| Mus musculus potassium voltage gated channel... 2.228e+04 0.0 gb|AC123552.4| Mus musculus chromosome 7 clone RP24-396I18, c... 2.098e+04 0.0 gb|AC090652.32| Mus musculus strain C57BL/6J chromosome 7 clo... 2.098e+04 0.0 dbj|AK147476.1| Mus musculus adult male brain UNDEFINED_CELL_... 1.238e+04 0.0 dbj|AK147682.1| Mus musculus adult male brain UNDEFINED_CELL_... 1.237e+04 0.0 dbj|AK139272.1| Mus musculus 7 days neonate cerebellum cDNA, ... 6817 0.0 dbj|AK086710.1| Mus musculus 15 days embryo head cDNA, RIKEN ... 4486 0.0 dbj|AK082119.1| Mus musculus 0 day neonate cerebellum cDNA, R... 3443 0.0 emb|Y07521.1| Mouse neuroblastoma-Rat glioma hybrid cell line... 3334 0.0 gb|BC132439.1| Mus musculus potassium voltage gated channel, ... 3123 0.0 gb|BC125470.1| Mus musculus potassium voltage gated channel, ... 3123 0.0 gb|BC100546.1| Mus musculus potassium voltage gated channel, ... 2998 0.0 dbj|AK086765.1| Mus musculus 15 days embryo head cDNA, RIKEN ... 2887 0.0 gb|BC023222.1| Mus musculus cDNA clone IMAGE:5360910 2778 0.0 emb|X62840.1| R.rattus mRNA for potassium channel protein (31... 2752 0.0 ref|NM_012856.1| Rattus norvegicus potassium voltage gated ch... 2752 0.0 ref|XM_521851.2| PREDICTED: Pan troglodytes similar to voltag... 2699 0.0 dbj|AK162964.1| Mus musculus adult male spinal cord cDNA, RIK... 2532 0.0 ref|NM_004976.3| Homo sapiens potassium voltage-gated channel... 2370 0.0 gb|AC124056.8| Homo sapiens chromosome 11, clone RP5-1082L12,... 2364 0.0 gb|AC004736.1|AC004736 Human Chromosome 11p14.3 PAC clone pDJ... 2364 0.0 ref|XM_001087790.1| PREDICTED: Macaca mulatta similar to Pota... 2355 0.0 gb|BC107129.2| Homo sapiens potassium voltage-gated channel, ... 2350 0.0 ref|NM_001013605.1| Bos taurus potassium voltage-gated channe... 2346 0.0 gb|AY928179.1| Oryctolagus cuniculus voltage-gated potassium ... 2326 0.0 ref|XM_001172695.1| PREDICTED: Pan troglodytes similar to vol... 2324 0.0 ref|XM_001172719.1| PREDICTED: Pan troglodytes similar to vol... 2324 0.0 gb|S56770.1| KCNC1=voltage-gated potassium channel [human, mR... 2311 0.0 ref|XM_001087671.1| PREDICTED: Macaca mulatta similar to Pota... 2302 0.0 ref|XM_001087915.1| PREDICTED: Macaca mulatta similar to Pota... 2302 0.0 gb|L00621.1|HUMKCNC1X Human potassium voltage-gated channel (... 2300 0.0 ref|NM_001003113.1| Canis lupus familiaris potassium voltage-... 2257 0.0 ref|XM_001366617.1| PREDICTED: Monodelphis domestica potassiu... 1609 0.0 dbj|AK079373.1| Mus musculus 16 days neonate cerebellum cDNA,... 1570 0.0 ref|XM_421008.2| PREDICTED: Gallus gallus potassium voltage-g... 1561 0.0 gb|AC020786.20| Mus musculus chromosome 7, clone RP23-178G8, ... 1304 0.0 emb|BX933945.2| Gallus gallus finished cDNA, clone ChEST126m8 1192 0.0 gb|AC124078.5| Homo sapiens chromosome 11, clone RP1-59M18, c... 1116 0.0 gb|AC004582.1|AC004582 Human Chromosome 11p14.3 PAC clone pDJ... 1116 0.0 gb|AC124301.6| Homo sapiens chromosome 11, clone RP11-358H18,... 1077 0.0 ref|XM_001510596.1| PREDICTED: Ornithorhynchus anatinus potas... 1074 0.0 gb|DQ317693.1| Apteronotus leptorhynchus voltage-gated potass... 1027 0.0 gb|M96747.1|HUMKCNC1 Human KCNC1 gene, partial cds 1014 0.0 dbj|AK123157.1| Homo sapiens cDNA FLJ41162 fis, clone BRACE20... 917 0.0 ref|NM_153763.2| Homo sapiens potassium voltage-gated channel... 898 0.0 ref|NM_001039574.1| Homo sapiens potassium voltage-gated chan... 898 0.0 ref|NM_004978.3| Homo sapiens potassium voltage-gated channel... 898 0.0 ref|XM_001163532.1| PREDICTED: Pan troglodytes Shaw-related v... 893 0.0 ref|XM_001163574.1| PREDICTED: Pan troglodytes Shaw-related v... 893 0.0 ref|XM_001163611.1| PREDICTED: Pan troglodytes Shaw-related v... 893 0.0
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Aug 1, 2007 5:48 PM Number of letters in database: -122,348,322 Number of sequences in database: 5,722,179 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.33 0.621 1.12 Matrix: blastn matrix:1 -2 Gap Penalties: Existence: 0, Extension: 0 Number of Sequences: 5722179 Number of Hits to DB: 578524 Number of extensions: 23 Number of successful extensions: 23 Number of sequences better than 10: 12 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 17 Length of query: 12065 Length of database: 21352488154 Length adjustment: 35 Effective length of query: 12030 Effective length of database: 21152211889 Effective search space: 254461109024670 Effective search space used: 254461109024670 A: 0 X1: 15 (28.8 bits) X2: 32 (59.1 bits) X3: 54 (99.7 bits) S1: 15 (28.8 bits) S2: 24 (45.4 bits)